HsaEX1008929 @ hg38
Exon Skipping
Gene
ENSG00000256660 | CLEC12B
Description
C-type lectin domain family 12 member B [Source:HGNC Symbol;Acc:HGNC:31966]
Coordinates
chr12:10015612-10018563:+
Coord C1 exon
chr12:10015612-10015874
Coord A exon
chr12:10016976-10017078
Coord C2 exon
chr12:10018331-10018563
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTTCACTCTTTAAAGCAT
3' ss Score
7.16
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GATTTTCTTATGTCACAGCCATTACTCATGTTTTCGTTCTTTTGGCTGGGATTATCATGGGACTCCTCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCCCTCTCCATCCTTGTACGTCTCTAACTATTGAGGGTAAACACAAGCTTTCCATGGAATCCTGGGAAAATTAATAATGATTGTGAGAATTATAAATACAGACATAAAAAGAGGAGTACAACATACTGAGAAAAGAGCTCCAGTAACAAATATTGAAAGGAG
Seq A exon
CATGTTGTCAACGTTTTCTTAAACTGAATAATAATCACTCATCTTCTGTCAAAGATGCCATGCTTCAGCTGTGACTCAGCAGTTCCTTAAATCACAAACAATG
Seq C2 exon
ATTTAGTACTAAAGAACTTGACCAGATCAATGGATCCAAAGGATGTGCTTATTTTCAAAAAGGAAATATTTATATTTCTCGCTGTAGTGCTGAAATTTTTTGGATTTGCGAGAAGACAGCTGCCCCAGTGAAGACTGAGGATTTGGATTAGTATGCTTCTTCCAAATTCTCCAAGAAGTAAGAGACTTGTGAGTAAGCTCATATGAGGAAAGAGGAAACTACGGTACCAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256660-'8-7,'8-6,9-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(59.7=95.6)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.2=74.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTTCCATGGAATCCTGGG
R:
GGCAGCTGTCTTCTCGCAAAT
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains