HsaEX1008951 @ hg38
Exon Skipping
Gene
ENSG00000188393 | CLEC2A
Description
C-type lectin domain family 2 member A [Source:HGNC Symbol;Acc:HGNC:24191]
Coordinates
chr12:9898673-9916803:-
Coord C1 exon
chr12:9916700-9916803
Coord A exon
chr12:9913460-9913680
Coord C2 exon
chr12:9898673-9898976
Length
221 bp
Sequences
Splice sites
3' ss Seq
TTTAGAGTGTTCTTTTTCAGGTT
3' ss Score
8.09
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GAATTTTTGAAGAGGTACGCAGGAACTGATATGCACTGGATTGGACTAAGCAGGAAACAAGGAGATTCTTGGAAATGGACAAATGGCACCACATTCAATGGTTG
Seq A exon
GTTTGAAATTATAGGGAACGGATCCTTTGCTTTCTTGAGTGCTGATGGAGTCCATAGTTCCAGAGGATTTATTGATATCAAGTGGATTTGCAGCAAACCTAAATATTTTTTATAGAGCAGAAAAAACTTGAAAATGATTATCACACTTCAAGATTGAAAGAAGAGCTAATTATGCAAAAGTGGCTTTCTCACTTATTCTGTTACAGAATACGGAACCTCTG
Seq C2 exon
GCCATCAAACTCCAAATGGTCTTGCAACTGGAGCCTCCGACAATGGCTTCTTCTGCTGGGACCCCTTAGATAGGCCTCTGAGGGAGCTCTGACTGCCGTTTCCCCAAAACAATGTCCCCTGTCAGCAGGAAGCAGTTAAATCTGTCTTCATCCTTATCCTTAATATAACGGCAGTTAGATGTACTTCTTTAGAGGGAGTAAATTTATCAATTCAGAGCAATTCATCCTCCTCTTTCCATCTTTGATTCACAGTTAATAGGCTATAAATTTTGATAATGTAGAATAAACTACAGAAAACTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188393-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(43.6=100)
A:
PF0005916=Lectin_C=PD(35.7=89.7)
C2:
PF0005916=Lectin_C=PD(19.2=60.0)
Main Inclusion Isoform:
ENST00000339766fB12480
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGATTGGACTAAGCAGG
R:
AGAGGAGGATGAATTGCTCTGA
Band lengths:
305-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains