HsaEX1008972 @ hg38
Exon Skipping
Gene
ENSG00000169504 | CLIC4
Description
chloride intracellular channel 4 [Source:HGNC Symbol;Acc:HGNC:13518]
Coordinates
chr1:24743908-24797851:+
Coord C1 exon
chr1:24743908-24744224
Coord A exon
chr1:24744752-24745625
Coord C2 exon
chr1:24797742-24797851
Length
874 bp
Sequences
Splice sites
3' ss Seq
TGAATATGCTGGCTGCCAAGATC
3' ss Score
-0.15
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGTAGCTGTGAGTCAAGTATTATGGAAAGTCAGAAAAGGGCACAAGTAATTGTTTCCAGAGGAGGTGAAACTTGCCCCAGGCACTCAACAGCAGCAAACTAGGACCAGGTGCCTACAATCTCAAGGCAAGCACAGCTCTTGCCCTCGGGGGCTTAAATCCCAGGGCAGTTTAACTGGTTTGCGGACCACCTACTTCAGAATTGTCCTGGTGCTTGCTAAGATGTGGATTTCTCTTTTTCCCAGAGGATCTGGGAAACACAAAAAGCGGGGCTGCGTGTAGCACCTAGGTGATTCTGATGCACACTCAAATTTGACAG
Seq A exon
ATCGAAACGATCAGGAGCGTCAAAGGGAAAAACGAAGTCAGAGGCAGAAGAAAAAGGTGTTCCCCAGGCGATGAAAACTTTCCAGTAAGTTGTCTTGGAAAAGGCAACTCCGCGTAATAGAGGGACTTGGGGAGGTAGCCGCTGCGGGAAAGGGCGATGAGTCCTGGGGTGCTGCAGCGGGGGAGTGGGTAGGAGGCGCCTCCTAGCTTCCCCAGGGCGGCCGAGGCATGAGGTCACCTGGCACAGCAACAGCAGCAGCTGCGGAGGACGCGCAGGCGCTGCGGCGGGAGGCAGTGTCAGGCTCGGGCCCCTGGGGAATTCCTCCCCTCCTTTCCCCCCCGCACCAGTCCCCTAGAGAGGCGTACCCGGGTCCCGCCCGCCAGAGCCTGAGCTTTGTACCGCCCACCAAGGCCACGCCCCCTACCAGCTGTGGGGCGCCGCAGAGGTCCTTTCTTCGGCTCCGGAGCGGTCCCTCCGCCTTCCCCGCTCGAGGCCACGCCCCCGTGCTCCTGCCGCCTTATTTTCCCCGGAGAGTCCCGAGGCGCCGCGCCTTGGCCCTGCCTACAGCCCGAGGCCCCGCCCCCGGCGCCCCTCCCAGCCGTTTGAAGCGGCTCGGGCTGCGGCTGGCTCAGAGTGGCGCGGGGGGCGTGGGGCGGTGCTGAGGAGCTGAAGCCGTGGCCAGCTCGACGCCGGACAGTCCAGCGAGCAGCACGGCGGGAACCGGCAGCCGGAGCAGTCCCGGAGCAGAAGCAGCAGCAGCAGCAGCAGCCCTCGCCGTTCGCGGAGCGCAGCCGAGCCGGCCATGGCGTTGTCGATGCCGCTGAATGGGCTGAAGGAGGAGGACAAAGAGCCCCTCATCGAGCTCTTCGTCAAG
Seq C2 exon
GCTGGCAGTGATGGTGAAAGCATAGGAAACTGCCCCTTTTCCCAGAGGCTCTTCATGATTCTTTGGCTCAAAGGAGTTGTATTTAGTGTGACGACTGTTGACCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169504_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134171=GST_N_3=PU(41.1=81.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACTCAACAGCAGCAAA
R:
CAGGTCAACAGTCGTCACACT
Band lengths:
345-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains