HsaEX1009734 @ hg38
Exon Skipping
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X, M14 family member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr10:123943652-123948140:-
Coord C1 exon
chr10:123947502-123948140
Coord A exon
chr10:123944193-123944301
Coord C2 exon
chr10:123943652-123943775
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTTATCTGGTGCTTTGTAGAGC
3' ss Score
8.03
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GATAGAAAGCGTCTGTCAAAGACGGTGACACGTTAGGCCAGAGAGATTTGGGGACCTGAAGGCCTCGAAGGTCTCTCTCTGTGTTACTTTCATGGGCGTGGAGTACAGATGTGTCTCAGAGCACCCCTACACTTGTGCAGTGCACAACTCAAATAACTGAGCAGGGTGACCCTGCCCCACTAAGGGAGATGAGCTTTATCTTGAGGGGAATGGGCAGCCTTCAGAGGGTTTGAAGCAGAAGATTGACATGGCTATAAATGTGAGTTTAAAAGATCACAGTGGCTGTGGAGCATGTGTTAGAGGAAGAAAAGGCGGAGGCAGGAAAGCAGTTGGGAGGAAGCCTTGTGAATGCAGGTGAGGCTTGTCAGGGCTGCTTTCAGGCAGTGCTGGGGAGAATGGAGGGGCGCATGCTGTGTGGGGCCCGCAGTGGCTTCTGTAGGAGCTTGAGAGTGACAGCACAAGGAATGAAGAAAATGTCCAATCCACTGTAAACATCTTCG
Seq A exon
AGCCTACAGAAGACCTGTTTCCTGCTCTACAAGAAGGAATGGGGGTACTGATATTTAGGATGAATCTGCTCTATATCAGATGCTTTTTCCACGTTTCCTATATTCTCAG
Seq C2 exon
GTGGCTTCATTGCGCCAGACAGCCCCACCGTAGCCTGGGCCCTGAGCTTCTGCCTACCAGGCTGTCAGCAACATCTCAGCAACAGGCTCCAGCCAGTTGGCACATACCTGGCTCAGCTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898_MULTIEX2-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGCCTTGTGAATGCAGG
R:
TGCTGAGATGTTGCTGACAGC
Band lengths:
247-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains