HsaEX1009744 @ hg38
Exon Skipping
Gene
ENSG00000197721 | CR1L
Description
complement C3b/C4b receptor 1 like [Source:HGNC Symbol;Acc:HGNC:2335]
Coordinates
chr1:207699189-207701618:+
Coord C1 exon
chr1:207699189-207699274
Coord A exon
chr1:207699784-207699847
Coord C2 exon
chr1:207701519-207701618
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGTGCCTCTGTTCATCTAGATA
3' ss Score
8.43
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATTTCAATTAAAAGGCAGCTCTGCTAGTTACTGTGTTTTGGCTGGAATGGAAAGCCTTTGGAATAGCAGTGTTCCAGTGTGTGAAC
Seq A exon
ATACTGGAGTTATAGCAATGAACAAGATGAGTGAAGTCCCTGTCCCCATGTTGTTTTTACTCAG
Seq C2 exon
GTAAATCATGTGAAACTCCTCCAGTTCCAGTGAATGGCATGGTGCATGTGATCACAGACATCCATGTTGGATCCAGAATCAACTATTCTTGTACTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197721_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.6=90.0)
A:
NO
C2:
PF0008415=Sushi=PU(51.7=88.2)
Main Inclusion Isoform:
ENST00000508064fB12994
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCTGCTAGTTACTGTGT
R:
ATGTCTGTGATCACATGCACCA
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains