HsaEX1009746 @ hg38
Exon Skipping
Gene
ENSG00000197721 | CR1L
Description
complement C3b/C4b receptor 1 like [Source:HGNC Symbol;Acc:HGNC:2335]
Coordinates
chr1:207683872-207686940:+
Coord C1 exon
chr1:207683872-207683957
Coord A exon
chr1:207685694-207685761
Coord C2 exon
chr1:207686791-207686940
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTGTCATTCCTGGCCTACAGAGA
3' ss Score
7.38
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATACCGACTCATTGGTTCCTCGTCTGCCACATGCATCATCTCAGGCAACACTGTCATTTGGGATAATAAAACACCTGTTTGTGACA
Seq A exon
AGAATGAGCCATCGCAGAGGATGCTGAAACTCCCCGTGTGAATGTTTTTCTCAAGCCTCCAGTAAAAG
Seq C2 exon
GTGATGACATTAGGGAGTGAGGCCTTTGGAAGGTGATGAGATCATGAGAGCAGAGCTGTCACGAATGGGATTAGCGTCCTAATAAAAGAGGCCCAGAAGAGCTCCTTTGCCCCTCCTGCCATGGGAAGAAATGCTGAATCTGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197721_MULTIEX1-3/7=2-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.6=90.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000508064fB12995
Main Skipping Isoform:
ENST00000508064fB1811
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAACACTGTCATTTGGGA
R:
AGCATTTCTTCCCATGGCAGG
Band lengths:
179-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains