HsaEX1009767 @ hg38
Exon Skipping
Gene
ENSG00000134376 | CRB1
Description
crumbs 1, cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr1:197201462-197329003:+
Coord C1 exon
chr1:197201462-197201588
Coord A exon
chr1:197302440-197302471
Coord C2 exon
chr1:197328422-197329003
Length
32 bp
Sequences
Splice sites
3' ss Seq
TGATATTTGCTTTATTACAGTAG
3' ss Score
5.44
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
ATGTGCGCGCACGCCGCTTTACGCATGCTCCTTAAGTTCCCCGTACTCCCTCGGAGACCCTAGCTACACGCCGAATCCGTTACTCCGGGTTTTCGCAGTGGCTCGGTGGCCTACCCCGATCGAAACC
Seq A exon
TAGTCTGGAACTGAACCTACAATATCTCTGAG
Seq C2 exon
ATTCCTTTTGCAATAAAAACAACACCAGGTGCCTCTCAAATTCTTGCCAAAACAATTCTACATGCAAAGATTTTTCAAAAGACAATGATTGTTCTTGTTCAGACACAGCCAATAATTTGGACAAAGACTGTGACAACATGAAAGACCCTTGCTTCTCCAATCCCTGTCAAGGAAGTGCCACTTGTGTGAACACCCCAGGAGAAAGGAGCTTTCTGTGCAAATGTCCTCCTGGGTACAGTGGGACAATCTGTGAAACTACCATTGGTTCCTGTGGCAAGAACTCCTGCCAACATGGAGGTATTTGCCATCAGGACCCTATTTATCCTGTCTGCATCTGCCCTGCTGGATATGCTGGAAGATTCTGTGAGATAGATCACGATGAGTGTGCTTCCAGCCCTTGCCAAAATGGGGCCGTGTGCCAGGATGGAATTGATGGTTACTCCTGCTTCTGTGTCCCAGGATATCAAGGCAGACACTGCGACTTGGAAGTGGATGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134376_MULTIEX1-2/13=C1-4
Average complexity
C2
Mappability confidence:
100%=100=92%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000822=EGF=WD(100=16.4),PF0000822=EGF=WD(100=15.9),PF0000822=EGF=WD(100=15.9),PF0000822=EGF=PU(84.8=14.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGAGACCCTAGCTACAC
R:
GAGAGGCACCTGGTGTTGTTT
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains