HsaEX1009771 @ hg38
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr7:66145443-66154561:+
Coord C1 exon
chr7:66145443-66145500
Coord A exon
chr7:66150702-66150948
Coord C2 exon
chr7:66152208-66154561
Length
247 bp
Sequences
Splice sites
3' ss Seq
ATTATCTTGTTTTACTTCAGTCT
3' ss Score
6.88
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGCTGAGAAGCTCCAGCTGCTGAACCACCGGCCTGTGACTGCTGTGGAGATCCAGCTG
Seq A exon
TCTGCCAGGATTTCTTTCTGGAACTCCCTGTGGTCCCAGTTGCCGGATTTCAGAGATTGCTGTGGGGAATGCCATGGAATAGAATCTGGCCACCTTGAGCTGAGAAAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCCTGCTGCTTTTAAAAAGGCAGCTGACGACCTAATTCTGTTTAGAATTAGGGGCGAAGCTAAGGAAACTGGCTCAGGCT
Seq C2 exon
ATGGTGGAAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTGAAGCTCTTCTCCACACCGTCACCAGCATTCTGCCTGCAGAGCCAGAGGCTGAGCAGAAGAAGAATACAAACAGCAATGTGGCAATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATTTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAATAAGTTAAAAAGAAATATTTGTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGGGGACAGTGACCGCGGACCCCTCTGTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGCACAGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
86%=86=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.000 C2=0.850
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=FE(40.4=100),PF149421=Muted=FE(28.4=100)
A:
PF0387411=RNA_pol_Rpb4=PD(0.1=0.0)
C2:
PF0387411=RNA_pol_Rpb4=PD(51.1=48.0),PF149421=Muted=PD(67.2=90.0)
Main Inclusion Isoform:
ENST00000395326fB13010
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTGCTGTGGAGATCCA
R:
AACTAACCACAAAGCCAGGCC
Band lengths:
299-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains