HsaEX1009945 @ hg38
Exon Skipping
Gene
ENSG00000183117 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr8:2957696-2961214:-
Coord C1 exon
chr8:2961141-2961214
Coord A exon
chr8:2959258-2959523
Coord C2 exon
chr8:2957696-2957807
Length
266 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTCTTTCTGCCAGTAA
3' ss Score
7.44
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
ATCCTGCTCATAACACCTGCCCAGACCCTGGTACGCCACACTTTGGAATACAGAATAGCTCCAGAGGCTATGAG
Seq A exon
TAAATGATACAGGTTATCCATGACCTTCCTGAGAATGTCAGCATGTTTACCAGGAGGTCTGGTTGGAATTGCAAACATGCTTGCATGGAGAGTTGATGGACACCGTTCCTGATAGAGAGGAAGTGGGCTGGGAGCAGCAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCCAGGCAGAAGAATCGCTTGAGGCCAGGAGAACAGCCTGGGCAACATAGCAAGACCCTATTTCTACAAAGAATACAAAAAATCATCTGGGCATG
Seq C2 exon
GTTGGAAGCACGGTTTTTTTCAGGTGCAGAAAAGGCTACCATATTCAAGGTTCCACGACTCGCACCTGCCTTGCCAATTTAACATGGAGTGGGATACAGACCGAATGTATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183117-'126-145,'126-144,127-145
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=69.2)
A:
NA
C2:
PF0008415=Sushi=PD(65.5=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTCATAACACCTGCC
R:
ATTCGGTCTGTATCCCACTCCA
Band lengths:
180-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains