HsaEX1010563 @ hg38
Exon Skipping
Gene
ENSG00000269439 | CTD-3131K8.2
Description
NA
Coordinates
chr19:17491076-17511468:-
Coord C1 exon
chr19:17511343-17511468
Coord A exon
chr19:17492356-17492392
Coord C2 exon
chr19:17491076-17491197
Length
37 bp
Sequences
Splice sites
3' ss Seq
CACAGAAATTCCACTTCTAGGAA
3' ss Score
6.4
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGTGAGTTCGGGAAGCCAGTGCCCGAATGCTCAACCTTGCTGTATCAGGGAGGGCCGGAGAGGGGAGCTCAAGAAGAGGACGTCCTATCGAGGTGGCAGGGATTTTCTGAAGGAGGGCGTATTTTG
Seq A exon
GAAACTGACAGAATGAGCTTCCAAGGCCCAGGAGACA
Seq C2 exon
ATGGAATCTCACTCTGTCACCCAGACTGGAGTGCAGTGGCCCGATCTCAGCTCACTGCAGCCTCCGCTTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTTCCAGGCAGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000269439_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTTTCTGAAGGAGGGCG
R:
GGAGAATCGCTTGAACCTGGG
Band lengths:
118-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains