HsaEX1010725 @ hg38
Exon Skipping
Gene
ENSG00000138161 | CUZD1
Description
CUB and zona pellucida like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
Coordinates
chr10:122832149-122833940:-
Coord C1 exon
chr10:122833672-122833940
Coord A exon
chr10:122833161-122833203
Coord C2 exon
chr10:122832149-122832450
Length
43 bp
Sequences
Splice sites
3' ss Seq
AACCCTGCTTCTTTTGAAAGGCT
3' ss Score
5.35
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
ATGTAGTCGAGATGAAACTTGTAAGGTGTATCCCTTATTTGGACACTATGGGAGATTCCAGTTTAATGCCTTTAAATTCTTGAGAAGTATGAGCTCTGTGTATCTGCAGTGTAAAGTTTTGATATGTGATAGCAGTGACCACCAGTCTCGCTGCAATCAAGGTTGTGTCTCCAGAAGCAAACGAGACATTTCTTCATATAAATGGAAAACAGATTCCATCATAGGACCCATTCGTCTGAAAAGGGATCGAAGTGCAAGTGGCAATTCAG
Seq A exon
GCTTGAAACCTGAGATCTGCCCAGATGCATGAAAGGAATGATG
Seq C2 exon
GATTTCAGCATGAAACACATGCGGAAGAAACTCCAAACCAGCCTTTCAACAGTGTGCATCTGTTTTCCTTCATGGTTCTAGCTCTGAATGTGGTGACTGTAGCGACAATCACAGTGAGGCATTTTGTAAATCAACGGGCAGACTACAAATACCAGAAGCTGCAGAACTATTAACTAACAGGTCCAACCCTAAGTGAGACATGTTTCTCCAGGATGCCAAAGGAAATGCTACCTCGTGGCTACACATATTATGAATAAATGAGGAAGGGCCTGAAAGTGACACACAGGCCTGCATGTCACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138161-'29-26,'29-25,30-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.175
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(23.8=63.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000368904fB13300
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTCCAGAAGCAAACGA
R:
TGGTTTGGAGTTTCTTCCGCA
Band lengths:
146-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains