HsaEX1010886 @ hg38
Exon Skipping
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450 family 4 subfamily A member 11 [Source:HGNC Symbol;Acc:HGNC:2642]
Coordinates
chr1:46937996-46941465:-
Coord C1 exon
chr1:46941239-46941465
Coord A exon
chr1:46940682-46940846
Coord C2 exon
chr1:46937996-46938137
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCTGGCCCTGTGTTTGCCAGGGA
3' ss Score
8.23
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGGGCACTCAGAGATCCAGCAGGTGCTGCACCATGAGTGTCTCTGTGCTGAGCCCCAGCAGACTCCTGGGTGATGTCTCTGGAATCCTCCAAGCGGCCTCCCTGCTCATTCTGCTTCTGCTGCTGATCAAGGCAGTTCAGCTCTACCTGCACAGGCAGTGGCTGCTCAAAGCCCTCCAGCAGTTCCCGTGCCCTCCCTCCCACTGGCTCTTCGGGCACATCCAGGAG
Seq A exon
GGAGCACAGACACCCATCTGAGGAATCCATGCCATGAGGAGTTTATGGTCTGTGAAGAATACAGGCAGGAATTTGAGAAGGTGTCAGACTGCAGGAAAGGAGCTCACTCTGCTGGGGTGGATATCTGAGGCAGAGATCTGCTGGTATAGGGGACCAACTGGCTAA
Seq C2 exon
CTCCAACAGGACCAGGAGCTACAACGGATTCAGAAATGGGTGGAGACATTCCCAAGTGCCTGTCCTCATTGGCTATGGGGAGGCAAAGTTCGTGTCCAGCTCTATGACCCTGACTATATGAAGGTGATTCTGGGGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.1=21.5)
A:
NO
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
ENST00000310638fB13376
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTGGGTGATGTCTCTGG
R:
GAACTTTGCCTCCCCATAGCC
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains