HsaEX1010900 @ hg38
Exon Skipping
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450 family 4 subfamily F member 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr19:15508714-15523799:+
Coord C1 exon
chr19:15508714-15508814
Coord A exon
chr19:15509590-15509793
Coord C2 exon
chr19:15523693-15523799
Length
204 bp
Sequences
Splice sites
3' ss Seq
CTACCACCCTCATTTTACAGGCA
3' ss Score
10.46
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CCGGCCACGGGGACCCCCCCAGGACCCAGGACGGGGCTGCATGCCCGGGGCACTCGTGGGGAGAGGGGCACGTGGGTGTGTCCCCGACGTTTGCTGCATTT
Seq A exon
GCACGGAAACTGAGGGCCAGAGAGAAGAAGCCTGTGCCTGTGGATACCCAGTGCCCAGTGGGAGAGCTGGGATTTGAAAAAACAAGCCCTGTTTGACCCCAAAGCCTCAGTCCACTTTCCGATGTCCCCGGCATCACCAAATGGCCCAGCTTGGGTTTCTGAACAGTAACATTAACTCTGGCCTGGTGTCTGGCGGTGACCCAG
Seq C2 exon
GAGCTGGCCCTAAAGCAAGGACCTGAGTGCAAGTAATTTTTTTGGGAAGTAATAACAGAAAATACCAGCAAGGAAGAAGACAGTGAACCCAAAAGAATTGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-'1-1,'1-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCACTCGTGGGGAGAG
R:
TTCAATTCTTTTGGGTTCACTGTCT
Band lengths:
156-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains