HsaEX1010968 @ hg38
Exon Skipping
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr9:121742785-121757166:+
Coord C1 exon
chr9:121742785-121742921
Coord A exon
chr9:121749785-121749996
Coord C2 exon
chr9:121757013-121757166
Length
212 bp
Sequences
Splice sites
3' ss Seq
GATTGATCCCCATTTTGCAGATG
3' ss Score
7.66
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
TGTTCCTCTTCTTTCGTGTTGTGTCAGAAGCCATGATTTCCAGTCTTCTCATCTGGAAGATGAAGGAAAAGATAGACCCGACCCCACAGGGTTCTGAGGCTCAAACTGAAAGCCTGGTGGTGGGGCACCTGTGACAG
Seq A exon
ATGGGGAAAACTGAGGCATGGAGAACGTAAAGCGTTTGAGTCGTCACGGGACAGGAACAGGAAACAGCCTGGGAAGTCCATATCTTGTCACTCCAAATTGTCAAAAGTGTGACCTATCCCAGAAATGTCAGCCTTGATAGCAGCGTGTGCATCGTTCACCAGTGTTGTTCATAGCTGTGTCTCCAGCTCCTGACATCGTGGCTGGCAATGAG
Seq C2 exon
GTCCCATCTGATGCCGAGGCTGAAGGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAAGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTTGGCCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848_MULTIEX2-5/8=4-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.246
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=PU(57.5=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTTCTTTCGTGTTGTGTCA
R:
GAAGCAGTAGTCCTGGCCAAG
Band lengths:
285-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains