HsaEX1011476 @ hg38
Exon Skipping
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46332905-46367399:+
Coord C1 exon
chr11:46332905-46333487
Coord A exon
chr11:46345256-46345585
Coord C2 exon
chr11:46367291-46367399
Length
330 bp
Sequences
Splice sites
3' ss Seq
CCCCTTGCTTTCTTGTGCAGCTC
3' ss Score
10.87
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GCTCCAGCCGTCCGGGGGGCGCCGCGGCGCGCAGAGCGCAGCACCCCGACTCCAGCCAGGAGCCCCCGCCCCCCCGGAGCGCAGGAGGACCCCGGCCCGCCTCTCCCAGGCGCAGCGCCCAGCATCTCGCTGCTCCTGTCGTCTAAGCGTCGGCGTCGCTAGGGACCTGCGGAACCCGGCGCTCCCCTCCCTCCCCGCCTCGCGTCCCCGGCCCGGGCGGACTGGAGACTCGAACTTGAGCGGGTGCCCGAAAGGCCGCAGGAGCCGCGGGCGGAAGGCGGCCGCACGATGGCCGAGGGGCAGGGCGGCGGAGGGCAGCGCTGGGACTGGGCTGGCGGCGGCCGGGCAGCCGAGGAGGAGGTGGTGCGGCGGCGATGCCGGCGCGGGGAGGAGGCCCAGGTCGCGCAGCCCTGGCCCGAGGGTTCCCGGGGCACGGCCGCTGGGCCCCCGGTGGAGGAGCGTTTCCGCCAGCTGCACCTACGAAAGCAGGTGTCTTACAG
Seq A exon
CTCTTCACGGCAGCTGGCCCCAGCCAGCGGAAGGCGCCTATGAGCCCTGAGCCTGTGGTCCTCAGCTTGGGCGGCCAGCGGCCTCTAGCAGGCCCCCCCCTCGACCCCACCCCCGTCAGGAAGTGCCGAAAGAGGAAGAGAGTCGCCGGGCAGGATGAGCGCACCGGGGGCTGGCCACAGTGCCGGGGGAAGCTGCAATGAATCCTCAGCTCTGGGCCCAGTGGAGGCGCTGGGGACGGAAGAAGGGGAGCGGCCGGGGTCACTGAGGCAGATGTGGCGCTACCGCTCCTGGGACGTGCCACAGATCCCATCAGAGGCACCCCAGACACA
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCCCCCCCTCCGCCCACCCCTGGGGCCCCGTGCAGCGAGTCAGAGCGGCAGATCCGGAGTACAGTGGACTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091_MULTIEX1-1/6=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=0.867 C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000343674fB13713
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGACTCGAACTTGAGCG
R:
CTCTGACTCGCTGCACGG
Band lengths:
358-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains