HsaEX1011623 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:329433-341329:-
Coord C1 exon
chr10:341199-341329
Coord A exon
chr10:340779-340989
Coord C2 exon
chr10:329433-329601
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACTTTGACTTTCTGCAGCAGGGA
3' ss Score
5.39
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGTCTCACGCAGCCACCAGTGCCTTCTGCCGTTCCATTAAGCTGCAGTGTGAACTTTACCCCTCTAGAGAAGTGGCCATCTGCCTGGACCCTTACTGTGGACTGGGATTTGTCCTCTGGTGCCTCTGCAG
Seq A exon
GGAAGGAGCATTTTGGAGAGCCGTCTGTTGCGGACCTTTATTTCTGACAATCAGAAGACTCCCAGGCTCCAGGCTTGGTTCTTATGCCTGTAAAACCTGGCGATGGTGCTGGGCCTGGGTTCTCGCTGGGCCAGCAGGCATTGCAGGCTGTCACCTCCCTCAGGCTTCACCCCAGCTGTTACTGCGGGGCTTAGGCTGGGCAAGCCCAGAG
Seq C2 exon
TGTGTATTCTGGGCACCAGTCCATCCTGATCCCGCCCTCTGAGCTGGAAACCAACCCCGCCTTGTGGCTTCTTGCCGTGAGTCAGTACAAAGTCCGAGACACGTTTTGCTCCTACTCCGTGATGGAGCTGTGCACCAAGGGGCTGGGCTCGCAAACAGAGTCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
80%=100=80%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.1=100)
A:
PF0050123=AMP-binding=PD(3.1=9.9)
C2:
PF0050123=AMP-binding=PU(25.2=96.9)
Main Inclusion Isoform:
ENST00000634311fB13817
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTCACGCAGCCACCAG
R:
GACTCTGTTTGCGAGCCCAG
Band lengths:
293-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains