HsaEX1011629 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:440871-472549:-
Coord C1 exon
chr10:472439-472549
Coord A exon
chr10:450036-450364
Coord C2 exon
chr10:440871-440996
Length
329 bp
Sequences
Splice sites
3' ss Seq
TAAACATCTTAAATCTGTAGAAG
3' ss Score
5.23
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGGTGGACCAAGCTTTGCCGCAAGAACGCCGGGCTCCTGTCACTCCTTCCTCCGCCTCTCGCTACCACCGCCGACGGTCTTCAGGGTCACGAGATGAGCGCTATCGGTCAG
Seq A exon
AAGTGAGTCAAGGTGCCAGATCCTGACAAGTGCCAAATGTCTACGTGGGACCTCTCTTGTGTCGGGTCCACATCACAAGAAGAAAAGTCATTCAAATGCAACACGGGACCATTGTAATTTATACATAAACATGTTAAATCTGTGGAAGTGAGCCACGGTGCCAGACCCTGACAAATGCCGAATGTCTACGTGGGACCTCTCTTGTGTCGGGTCCACATCACAAGGAGAAAAGTCATTCAAATGCAACATGGAGTGGACGTGAAGCTTTCAGAAACGTCCGTGAATCAGAGCGACTGTTTTCCCATTTGCTGGATTCCCCATTCGAGATG
Seq C2 exon
ACGTCCACACGGAAGCTGTCCAGGCGGCTCTGGCCAAACACAAAGAGCGGAAGATGGCAGTGCCTATGCCTTCCAAACGCAGGTCCCTGGTCGTGCAGACCTCGATGGACGCCTACACCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_MULTIEX2-9/14=8-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.866 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(32.5=100)
A:
NO
C2:
PF064646=DMAP_binding=PD(26.3=69.8)
Main Inclusion Isoform:
ENST00000634311fB13823
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCTTTGCCGCAAGAAC
R:
CTGGAGGGGTGTAGGCGTC
Band lengths:
230-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains