HsaEX1011790 @ hg38
Exon Skipping
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr10:122570890-122573762:+
Coord C1 exon
chr10:122570890-122570937
Coord A exon
chr10:122572314-122572361
Coord C2 exon
chr10:122573715-122573762
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTCCACCCTGCAGGTT
3' ss Score
11.21
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTTCTCCATTTCCCTCGGAGTCGACCCTGGAGTCAACTGTAGCAGAAG
Seq A exon
GTTCTCCGATTTCCTTGGAGTCAACCCTGGAGTCAACCGTAGCAGAAG
Seq C2 exon
GTTCTCTGATTCCCTCAGAGTCAACCCTGGAGTCAACTGTAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-'6-4,'6-3,7-4
Average complexity
S
Mappability confidence:
62%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.118 C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATTTCCCTCGGAGTCG
R:
TCTGCTACAGTTGACTCCAGGG
Band lengths:
92-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains