HsaEX1011855 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123804833-123808953:+
Coord C1 exon
chr12:123804833-123805040
Coord A exon
chr12:123806342-123806395
Coord C2 exon
chr12:123808797-123808953
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCTCATCCCTGTTTTACAGAGG
3' ss Score
8.34
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
GCGTGAAGGAATTTTTTGAACACATTGAGCGAGAAAGGGCCAGCGACGTGGACCACATGGTCCGGTGGTATCTTGCCATTGGACCACTGCTGACCAAAGTTGAGGGCCTGGTCGTCCACACCAACACAGGCAAGGCCCCCAAGCTGGCCTCCTACTACAAATACTGGGAAAAGAAAATTTATGAGGTCCTGACAAAGCTCATCCTGAA
Seq A exon
AGGAGGATACAGAATCTTGGCAGGTTAAGTGACTCGTCCGGGACCACACAGCCA
Seq C2 exon
GAACTTGCAGTCTTTTAATTCTTTGATCCTTGGAAATGTCCCTCTGTTCCACACTGAAACCATTCTGACGGCACCTGAGATCATCCTTCATCCCAACACAAATGAGATCGACAAGATGTGCTTCCATTGTGTCCGGAATTGCGTGGAGATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'21-24,'21-23,22-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000409039fB13947
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCTGGCCTCCTACTACA
R:
AGGTGCCGTCAGAATGGTTTC
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains