HsaEX1011899 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:224954959-224960302:+
Coord C1 exon
chr1:224954959-224955098
Coord A exon
chr1:224959489-224959559
Coord C2 exon
chr1:224960153-224960302
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTTACTAAATTGTAGCAC
3' ss Score
5.74
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ACTTTTAAGATATGAAGAGAAAAAATATGAAGATGTGAAACCATTAGAGACTCAACCAGCTGAAATAGCAGAAAAGGAAACATTGGAATATAAAACAGTTAGAACATTCTCTGAATCTTTGAAGTCAGAGAAAACAGAAG
Seq A exon
CACAATGCCTTGCACTACAGAAATATTTGTTCAATGAATGAGAACAAGAAAATGTATTTCTTTCTTCAAAG
Seq C2 exon
ATTACCTTAGAGAAAGTATAATTCAACAACATATGGTTTCTCCAGAGCCAGCTTCCCTTAAGGAGAAAGGGAAGTCAAGGAGAAAAAAGGATCAAACTCATGCTTGTCCAAATGTTAGGAAAGCCAGGCCTGTGTCCTATGATAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX3-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=0.000 C2=0.920
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000430092fB13966
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTAGAGACTCAACCAGCTG
R:
TCTCCTTAAGGGAAGCTGGCT
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains