HsaEX1011906 @ hg38
Exon Skipping
Gene
ENSG00000267432 | DNAH17-AS1
Description
DNAH17 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48594]
Coordinates
chr17:78489375-78490105:+
Coord C1 exon
chr17:78489375-78489574
Coord A exon
chr17:78489713-78489802
Coord C2 exon
chr17:78490002-78490105
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACGGTGCTGGTTTTTCTCAGAAA
3' ss Score
7.34
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
CCCTACCCTCCAGCACTCCAAGGCAGGACTCGCCTCACTTCTGGCGCCTCCTGCTGCCTCCTCCATACCTCATTGCCATCTGGCTCTGCCCTCAACACGCCCTGAAGCTGTTCTCCCTGAGTGATGGAGATGCGCCTAGCTCCCAAATGCAATGGGAACTCTTCTGTCCTTGGCTTGACTCTGGGTGCCATCCTACTGAG
Seq A exon
AAAACCAGCTTTTTTCATCACTCTCTACATCTTTCCTGGAGAGCCCAGCTCCCCAGCATGGAATATCCTGGGGTTGGACACACATGGCAG
Seq C2 exon
GAAATCCCTTACTCTGTCAATCACCAGCCACGTGTCCAAGCCCGAAAATATGCCTCTGGAATCAATATCAAGTCTTCCATTTCTCCAGATTTCAGATATTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267432_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTCCTCCATACCTCAT
R:
CGTGGCTGGTGATTGACAGAG
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains