HsaEX1011915 @ hg38
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:21147522-21150534:-
Coord C1 exon
chr16:21150290-21150534
Coord A exon
chr16:21149104-21149219
Coord C2 exon
chr16:21147522-21147622
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGACAGTTT
3' ss Score
3.99
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGAACTCCTCAGCGGGCCAAAGTCTATGACCTCAGAGAGGCAACCTCATGAACAGAGCTTTCAGAACATCTGGAAAGTTCCATTGTTGGTGTCATCCCCATTATGCTATAAGGAAGTGTGAATTTCAGACCAACTGGATAGGAGAGGCACATCCCTGGAGAAGCTGAAAGCTCTTTATTCATTTTAAAAAAATAGCTACAATTAGAGTGGACACCATGGGTGACATGGATTGCTCATCTCAGAAG
Seq A exon
TTTGTCTCTGTTATCCAGGCTGGAGTGCAGTGGCGTGATCTTCACTCACTGAAGCGTCTGCTTTCTGGGTTCAAGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGAACTACAG
Seq C2 exon
GAATCATAAAGAGTTGCTTATGTGTGTGTTAAATACACAGAAAATTCAGTGCCACTGCCTGAGTGAATTTCTCTTTGGAATTTTGCACATGTGAAAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'4-4,'4-3,5-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGTTGGTGTCATCCCCA
R:
TCCAAAGAGAAATTCACTCAGGCA
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains