HsaEX1011954 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11937352-11942485:+
Coord C1 exon
chr17:11937352-11937522
Coord A exon
chr17:11940618-11940662
Coord C2 exon
chr17:11942303-11942485
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTCTAACATCAGCTC
3' ss Score
5.83
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
TACATCGATGCTGAGCTGCCCCCAGAATCCCCCTACCTCTATGGCCTCCACCCGAACGCAGAGATTGGCTTCCTGACCCAAACCTCAGAAAAGCTCTTCCGCACTGTGCTGGAGCTGCAGCCTCGGGACAGCCAGGCCAGAGACGGAGCGGGCGCCACAAGAGAAGAAAAG
Seq A exon
CTCTTTTCCTGGAGATGGCATTGTGTGTTAACAATACAAGGCAAG
Seq C2 exon
GTCAAGGCACTTCTGGAAGAAATATTGGAGCGGGTGACAGACGAGTTTAACATCCCAGAACTGATGGCCAAAGTGGAGGAGCGCACCCCTTACATTGTAGTTGCCTTCCAGGAGTGTGGCCGGATGAATATCCTCACCAGAGAGATTCAGCGCTCACTGAGGGAGCTGGAGCTCGGCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(12.4=100)
A:
PF0302810=Dynein_heavy=FE(1.9=100)
C2:
PF0302810=Dynein_heavy=FE(13.3=100)
Main Inclusion Isoform:
ENST00000262442fB14011
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGAAAAGCTCTTCCGC
R:
TTAAACTCGTCTGTCACCCGC
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains