HsaEX1012271 @ hg38
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl peptidase like 10 [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr2:115343817-115499604:+
Coord C1 exon
chr2:115343817-115343912
Coord A exon
chr2:115400802-115400953
Coord C2 exon
chr2:115499510-115499604
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGGCCTTCTTTCCAGGTC
3' ss Score
10.25
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGAACTCACAAATTCGTCAGAAACCAGATTGTCTTTGGAAGACCTCTTTAGGAAAGACTTTGTGCTTCACGATCCAGAGGCTCGGTGGATCAATG
Seq A exon
GTCGCTGCCATCTTCACTCCCCACGTCAATAGAGTCAGCAAGAATAGTATTTGTAACAGCGGGCATTGAAAACCAACAGTTTCGAGGCTATGCATGGGGAACTTCCTCAGTTTGGAGTAGCAAGTGAAAACCTATGGCTTTGCCAGCTAAAA
Seq C2 exon
ATACAGATGTGGTGTATAAAAGCGAGAATGGACATGTCATTAAACTGAATATAGAAACAAATGCTACCACATTATTATTGGAAAACACAACTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497_MULTIEX2-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000409163fB14224
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCACAAATTCGTCAGAAACC
R:
GTTGTGTTTTCCAATAATAATGTGGT
Band lengths:
186-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains