HsaEX1012284 @ hg38
Exon Skipping
Gene
ENSG00000130226 | DPP6
Description
dipeptidyl peptidase like 6 [Source:HGNC Symbol;Acc:HGNC:3010]
Coordinates
chr7:154885633-154887734:+
Coord C1 exon
chr7:154885633-154885744
Coord A exon
chr7:154885855-154885924
Coord C2 exon
chr7:154887676-154887734
Length
70 bp
Sequences
Splice sites
3' ss Seq
CACCGTCCCGCTAACCACAGGTG
3' ss Score
8.12
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GATTACGGTGGCTACCTGAGCACCTACATCCTCCCAGCAAAGGGAGAAAATCAAGGCCAGACATTCACCTGCGGCTCTGCTCTCTCTCCAATAACAGACTTCAAACTCTATG
Seq A exon
GTGCCTCCAGGCCACAGTCACCACCTTGGGCTGATGGAAGAACCCGGGGAAGGAGAGGGAAGGGTCTCAG
Seq C2 exon
CCTCTGCGTTTTCCGAGAGGTACTTGGGCCTCCATGGACTTGACAACAGAGCATACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130226_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(17.6=100)
A:
PF0032616=Peptidase_S9=PD(15.5=83.3)
C2:
PF0032616=Peptidase_S9=FE(9.0=100)
Main Inclusion Isoform:
ENST00000332007fB14233
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTACGGTGGCTACCTGAG
R:
CGTATGCTCTGTTGTCAAGTCCA
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains