HsaEX1012376 @ hg38
Exon Skipping
Gene
ENSG00000171587 | DSCAM
Description
DS cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr21:40167218-40179094:-
Coord C1 exon
chr21:40178927-40179094
Coord A exon
chr21:40171491-40171568
Coord C2 exon
chr21:40167218-40167288
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACTTTTTTTTTTTTTTTAGGAG
3' ss Score
10.97
5' ss Seq
TTGGTAGGC
5' ss Score
5.85
Exon sequences
Seq C1 exon
ACTCCTGGGATTCTGCTCAGAGAACCAAAGATGTTTCCCCTCAGCTGAACTCGGCCACCATCATTGATATCCACCCTTCCTCCACCTACAGCATCCGCATGTACGCCAAGAACCGGATTGGCAAGAGCGAGCCCAGCAACGAGCTCACCATCACGGCGGACGAGGCAG
Seq A exon
GAGGAGGGATCCAAATGCTTTCACTTCAGGGAACAGGCAGAACAATAAATACATTACTGACAAATCATGGCAGCATTG
Seq C2 exon
CTCCTGATGGTCCACCTCAGGAAGTTCACCTGGAGCCTATATCATCTCAGAGCATCAGGGTCACATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587-'46-41,'46-40,47-41
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.509 A=0.333 C2=0.592
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.7=78.9)
A:
NO
C2:
PF0004116=fn3=PU(22.0=83.3)
Main Inclusion Isoform:
ENST00000400454fB14298
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACCCTTCCTCCACCTAC
R:
TCCATGTGACCCTGATGCTCT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains