HsaEX1012382 @ hg38
Exon Skipping
Gene
ENSG00000177103 | DSCAML1
Description
DS cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr11:117461450-117465182:-
Coord C1 exon
chr11:117464942-117465182
Coord A exon
chr11:117464312-117464555
Coord C2 exon
chr11:117461450-117461596
Length
244 bp
Sequences
Splice sites
3' ss Seq
TATTTGCCTTTGTGTTCTAGTCT
3' ss Score
7.97
5' ss Seq
CAGGTTGAG
5' ss Score
1.68
Exon sequences
Seq C1 exon
GCACCCAAGAAGGAGCTGCAGAACGGTGTCATCCGGGGCTACCAGATTGGCTACAGAGAGAACAGCCCCGGCAGCAACGGGCAGTACAGCATCGTGGAGATGAAGGCCACGGGGGACAGCGAGGTCTACACCCTGGACAACCTCAAGAAGTTCGCCCAGTATGGGGTGGTGGTCCAAGCCTTCAATCGGGCTGGCACGGGGCCCTCTTCCAGCGAGATCAATGCCACCACTCTGGAGGATG
Seq A exon
TCTGGAACCTGTCCACCATCTACCTGAGATGAGGCTGAGGAGTTAAGAAATCCTAACGTGCATGCGGCAGAGGATTTAGAGGATTTTTAAGTCTTCATTCTTCCATGACTGGAGAGAACCCCACACTCTGATTAGCACATCAAAGGGCCCAGTCTCTCCAGGAGGAGAGGGTTAGGAGGAAGCAGGAATATGCCTGCACTCCAAGCACAGAGAAGATGCCAGCTGGTACCTGAGCCCGCACCAG
Seq C2 exon
TGCCCAGCCAGCCCCCTGAGAACGTCCGGGCCCTGTCCATCACTTCTGACGTGGCCGTCATCTCCTGGTCAGAGCCCCCGCGCAGCACCCTCAATGGCGTCCTCAAAGGCTATCGGGTCATCTTCTGGTCCCTCTATGTTGATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177103_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.180
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(75.8=85.2)
A:
NO
C2:
PF0004116=fn3=PU(52.3=92.0)
Main Inclusion Isoform:
ENST00000321322fB14301
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGAAGGAGCTGCAGAAC
R:
GCCACGTCAGAAGTGATGGAC
Band lengths:
293-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains