HsaEX1012532 @ hg38
Exon Skipping
Gene
ENSG00000158560 | DYNC1I1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:2963]
Coordinates
chr7:96039277-96076197:+
Coord C1 exon
chr7:96039277-96039421
Coord A exon
chr7:96041462-96041637
Coord C2 exon
chr7:96076057-96076197
Length
176 bp
Sequences
Splice sites
3' ss Seq
AGAACAATTTCCACTTCTAGGAA
3' ss Score
7.87
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
CAAAGCAGGTATTGGTGAGGTCTTTGAAGGTCACCAAGGGCCAGTGACAGGAATTAACTGCCACATGGCAGTGGGCCCAATCGACTTTTCTCACCTGTTTGTCACATCATCATTTGACTGGACTGTCAAACTGTGGACCACCAAG
Seq A exon
GAATCTATGCCAAAGATATACCAGCAAAAATAAGACAGAAGACATATGGAGAAGGACATTCACTGAAAGATTATTTGAATAGCAAAAGAATGAATACAACTCAAAAATCTCTATCAGTACAGTGCTGTGTGAATCAAAAGTATGGTACCTCCACCCAAGAGAGTAACATTATTCAG
Seq C2 exon
CACAACAAGCCGCTCTACTCCTTTGAAGACAATGCAGACTATGTGTACGATGTCATGTGGTCCCCCGTGCATCCTGCGCTTTTTGCCTGCGTGGACGGGATGGGGCGCTTGGACCTCTGGAACCTCAACAATGACACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158560_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=85.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000324972fB14396
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAAGGTCACCAAGGGCC
R:
TGTTGAGGTTCCAGAGGTCCA
Band lengths:
254-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains