HsaEX1013147 @ hg38
Exon Skipping
Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3363]
Coordinates
chr10:95697807-95823364:+
Coord C1 exon
chr10:95697807-95697916
Coord A exon
chr10:95711849-95711993
Coord C2 exon
chr10:95823237-95823364
Length
145 bp
Sequences
Splice sites
3' ss Seq
TAACCTGCCTTTTTTGTCAGCGA
3' ss Score
5.99
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCATTCTGTTATAAGCAACAGAGAATGAACGAAGACAGAAAATTGGAACCAAGAAGTGGGATTTTGCTGATGACAAATACCTGAAAATGGGGAAGCAGCTTTGGAACTAG
Seq A exon
CGATTGTCAGTGAAACTTCAGAGGGCAAAGGGGAAGTTTTCCTTGGCCCCTCCAGTTTTGGTGCTGTGAACAGGATACCAAAGCTGCTCTGTTCTTCTGGAAGCTGCAATGAAGGGAACCAAGGACCTGACAAGCCAGCAGAAGG
Seq C2 exon
AGTCTAACGTGAAGACATTTTGCTCCAAGAATATCCTAGCCATCCTTGGCTTCTCCTCTATCATAGCTGTGATAGCTTTGCTTGCTGTGGGGTTGACCCAGAACAAAGCATTGCCAGAAAACGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185_MULTIEX2-2/9=C1-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.872 C2=0.003
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0115012=GDA1_CD39=PU(13.6=18.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCTGTTATAAGCAACAGAGA
R:
ACGTTTTCTGGCAATGCTTTGT
Band lengths:
234-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains