HsaEX1013184 @ hg38
Exon Skipping
Gene
ENSG00000100393 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr22:41129890-41131633:+
Coord C1 exon
chr22:41129890-41130003
Coord A exon
chr22:41130155-41130636
Coord C2 exon
chr22:41131388-41131633
Length
482 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTCTGCTTCCCTAGTGC
3' ss Score
7.38
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
TGGCACACTGTGCATCTTCTCGACAAATCATTTCACACTGGAAGAATTGTACAAGACATGATTGTCCTGTGTGTCTCCCCCTCAAAAATGCTGGTGATAAGAGAAATCAACAGC
Seq A exon
TGCATAGAATTGAACTGCTTAGGGAGTTTGAGGCTGCAGTGAGCTATGGTCATGTTACTGCGCTCCAGCCTGAGTGATGGAGTGAGAACCTGCCTCAATTAAAAAAAAAAAAAAAAGAAAGAAAAAACAGTGCAGTGGCTCATGCCTGTCATCCCAACAGTTTTGGAAGCCAAGGCAAGAGGATTCCCAGGAGTTCAAGACCAGCCTAGGCAACTTAGCAAGACCTTGTATCTTCCAAAAACTTTAAAAATTAGTTGTGTGTGGTGTGCCTGGCTGAGATGAGAGGATTGCTTGAATCCAGGAGGTGGAGGCTGTAGTGAGCTATGATTGTGGCACAGCAGTCCAGCCTGGGTGACACAAGGATACCCTGTCTTTAAAAAAAACAAAACAAAACAAAACAAAAAAAACAACTGAACACTGCTTAACATCCAAAATAAGATCCAGGAACTCTCAATACTTATTATTTATACAAACAGCAATAG
Seq C2 exon
CAATTTTGACTGGAGCACCCGTTGGACTTGGAAATCCTAGCTCTCTAGGGGTGGGTCAACAGTCTGCCCCCAACCTAAGCACTGTTAGTCAGATTGATCCCAGCTCCATAGAAAGAGCCTATGCAGCTCTTGGACTACCCTATCAAGTAAATCAGATGCCGACACAACCCCAGGTGCAAGCAAAGAACCAGCAGAATCAGCAGCCTGGGCAGTCTCCCCAAGGCATGCGGCCCATGAGCAACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100393_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.810
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000263253fB14824
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTGTGCATCTTCTCGACA
R:
TTGCTCATGGGCCGCATG
Band lengths:
352-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains