HsaEX1013714 @ hg38
Exon Skipping
Gene
ENSG00000143278 | F13B
Description
coagulation factor XIII B chain [Source:HGNC Symbol;Acc:HGNC:3534]
Coordinates
chr1:197039191-197040735:-
Coord C1 exon
chr1:197040522-197040735
Coord A exon
chr1:197040142-197040377
Coord C2 exon
chr1:197039191-197039411
Length
236 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCATTTTTTTTACACCAA
3' ss Score
1.86
5' ss Seq
AAAATGTGG
5' ss Score
-9.19
Exon sequences
Seq C1 exon
AGCCATGCACATTATCTTTTACTGAAATGGAAAAGAATAATTTACTTCTGAAATGGGATTTTGACAATAGACCACACATTTTGCATGGTGAATATATTGAGTTTATTTGTAGAGGAGATACTTATCCAGCTGAATTATATATTACTGGATCTATACTTAGAATGCAATGTGACAGAGGGCAGTTAAAATATCCAAGATGTATTCCAAGACAAAG
Seq A exon
CAAACAAACAACTGGAAGTGGTAATCAATTCAACAGGCCTTCTGAATTGTCTGAAGTGAAAGCAACGTTTGCCATTTGATATTTGTGACACTTTGGCAAATGGAAAAATAAACCAATTTATACGTGCAATATTTCAATGTGCAAAAATTAACCTATATGTTCTGTGATAAGGACAAAAATCACACTTTCTCCTACTTCTCAATATAAGTTCAAGCACTACTAATAAAGGTTGGAAA
Seq C2 exon
CACTCTGTCTTATCAAGAACCCTTAAGAACATAGAAATGAATGGCAGAAAGAGGAGTCATATTTCAATACATCATGAAATTCCTTATAAAATATAATTTTGAGGAAATAAGTTAAAAACTTCGGAGTTTTTCCTTGCTTAAATATTTGAATCTAAATTATTTGTGCTGAACATTTCGTTATTTATAAATGAAAACCAATAAATGTCTAATTTTTAGTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143278_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000367412fB15174
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTAGAGGAGATACTTATCCAGCT
R:
AAATAACGAAATGTTCAGCACAAAT
Band lengths:
292-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains