HsaEX1013888 @ hg38
Exon Skipping
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166 member B [Source:HGNC Symbol;Acc:HGNC:34242]
Coordinates
chr9:35562875-35563874:-
Coord C1 exon
chr9:35563767-35563874
Coord A exon
chr9:35563174-35563248
Coord C2 exon
chr9:35562875-35563080
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTCCCATTCGGCCTCCAAGATC
3' ss Score
4.11
5' ss Seq
TGGGTACAC
5' ss Score
0.45
Exon sequences
Seq C1 exon
CAGAGCCTTGGCTCAAAGGCAAACAAAAGGAAATGCCCGGCTCCCCATGGCTGTGGCCAGCACCTTCATACCAGGGCTCAACCCTCAGAACCCTCATTATATCCCAGG
Seq A exon
ATCTCCTGAGGTTCCCAGGGAGAGTCTACCTGTCAGGCGTGGGCAAGAAAGGCTCAGCTCCAGCATGATCCCTGG
Seq C2 exon
GTTTTGTACCCCGGGCACAGTTCATCTTTGCCAAGAACTGCAGCCAGGTCTGGGCCGAGGCTCTGAGTGACTTTACTCACTTGCATGAAAAGCAAGGGAGTGAAGAGCTACCAAAGGAGGCCAAGGGAAGAAAGGACACAGAGAAGGACCAGGTGCCAGAGCCGGAGGGGCAGCTGGAGGAGCCGACACTGGAGGTGGTGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187-'0-5,'0-4,1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.623
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.4=28.6)
A:
NA
C2:
PF106294=DUF2475=PD(85.7=87.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCCAGCACCTTCATAC
R:
TGGCCTCCTTTGGTAGCTCTT
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains