HsaEX1014082 @ hg38
Exon Skipping
Gene
ENSG00000233334 | FAM53B-AS1
Description
FAM53B antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:49499]
Coordinates
chr10:124703625-124714217:+
Coord C1 exon
chr10:124703625-124704331
Coord A exon
chr10:124707851-124707990
Coord C2 exon
chr10:124713434-124714217
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGTTTTGTCATCTTCCCCAGAAT
3' ss Score
7.65
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
CACATGGTAGAATCCCTTCCAGCAAAGCCGCCTGCTCTCCCCTGACTGCTTTCCCTTTCTGAGATGAGTTTTCCTTCCCTGGCCAGGGCTGGGAGGCCGTGCTCCTCCTGGCAGGGGCTCAGGCCACACCTCTTGGAAGAGCAGCTCAGCTGACCTTGGGCCCACATGTCCTGGAACCAACTCTGAAGCCAACACCAGGCAGTCCCACCCTGAGAAGGGACCAAGCACAGAGGCGGCCACTGCAGCCAACTGCACAGCTGGACCCGGGTAGGGCTCCTCCCTCGGGACCTCCAGATGGCTCCTCACCCTTGAGGTCCCTTCTTTTTGGTCAGAGCTACTCTAGTCGCACCCACTCAGTCGTGAACTGGAGCAGCAGCCAGAGAGAGAGTAAGACAATGGTGAATGAGAAGAGGCCAGGTGACAGGAACCTGCAAGCTCATCCATCCACAAACATCCACTGAGCACCTGCCACGGGCTGGGCCCCGTGCATTCAACAACAA
Seq A exon
AATGAACTAAACTGAGCTTCCAGCAGTGATGGGACCCACTCAGCATCGCCATTCTGCACAGCCTATCCGCAGCCCCTCTCCGATAACCCACCATCATTTCCCACCAAACAAATGAAGAAAGAGTGCGGCCTTCAGTTCAG
Seq C2 exon
TCTTCAATGTGTCTTCATTTGTTTGCAACCGCTGAACACAGCTATCTGATATCACTGTGGCCTGGGACTCTCAGCTTCCAGCAAGTGGGAGCCCCACCTGGCTCATCCACTTCAAAAGAGGATTGCATGCTAATGAATTAATACATACAAGAAAGTGTTGCAAACTCTACAATCCTATATAAATCTTAAGAAGATTAGAAGTTTACCAAATGCTCTGTAATGCATTTTGAAGGGCTATCCCTTAAAAGAAACTGGAAATCAGCAAGACAAGCTTTTCCTTCTTTTAGTGTCTTTATTTAGCCTGTACGTACTACTTGCACACATTAGTTTCACAGTTAATTTTACCGCCTTAAAAACAGGACTCAGATCAAAACCTAAACATGAGAACTCAGCCACTGACAGTGATTTTCCTGGTGGCTCCCGGAAGTCATTGCTCTCAGAGCTTCCATTTCCCCCTCCCATTAAGCAAAGGAAATAGGAGGGGAAGACAGCAATTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233334_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTACTCTAGTCGCACCCA
R:
CCACTTGCTGGAAGCTGAGAG
Band lengths:
257-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains