HsaEX1014190 @ hg38
Exon Skipping
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]
Coordinates
chr2:162209952-162214073:-
Coord C1 exon
chr2:162213938-162214073
Coord A exon
chr2:162211436-162211492
Coord C2 exon
chr2:162209952-162209996
Length
57 bp
Sequences
Splice sites
3' ss Seq
ACTGTTCTTTTCCTTTCCAGCTC
3' ss Score
11.98
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGATTATTATTTCAGTTGGCTCACGTGGGTTACTGATGAACGAGTATGTTTGCAGTGGCTAAAAAGAGTCCAGAATGTTTCGGTCCTGTCTATATGTGACTTCAGGGAAGACTGGCAGACATGGGATTGTCCAAAG
Seq A exon
CTCTTCTTCTGACTTCTCTAGAAATCTTATTATTCTCCAAGTTAATGTATTTGCAAG
Seq C2 exon
ACCCAGGAGCATATAGAAGAAAGCAGAACTGGATGGGCTGGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098-'26-33,'26-32,27-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(12.2=100)
A:
PF0093016=DPPIV_N=PD(0.1=0.0)
C2:
PF0093016=DPPIV_N=FE(3.8=100)
Main Inclusion Isoform:
ENST00000188790fB15472
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTATGTTTGCAGTGGCT
R:
CAGCCCATCCAGTTCTGCTTT
Band lengths:
137-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains