HsaEX1014385 @ hg38
Exon Skipping
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:HGNC:1211]
Coordinates
chr17:18772412-18779349:+
Coord C1 exon
chr17:18772412-18772683
Coord A exon
chr17:18775136-18775192
Coord C2 exon
chr17:18778475-18779349
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCAATCTCAATTTAGCAG
3' ss Score
6.48
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATGGTGGTCAACACAGAGAGCAATGTTCTCATGTTCCAGTTTGAGCACATAAAGTGGCAGTATGCCGTGGAAAAAACGAAACAAAAGAAGAATAAGGAGAAAGAGGAGGAAAAAGAAGAAAATAGTCTCATGGAAATTCTCTCTAAGTGTAATATTCAGGTTCACAGCCCAAGAGAGTCTGTATCCAGTAAACAAACTGTGATCCAAGAGCTCCTACCAGGCAAACCTCCCAAGTCCCGAGTACTCCTGAAGCCGGCCAAGTTCTCTTCAG
Seq A exon
CAGTGTTAATAGAGGAACTTCAAAGTCAAGGAAAGTCAAAATCACCCCGAAGAGATG
Seq C2 exon
CAGATGATGTGGAGAAAGCACAAAAACAAGGACAATTGGAAACTCCTGGAAAACTGCCCAGTCACCCAAAGAAAAAGTCTTGGAAAATCCCTATGTCACCTGACCAATTCCTCCTGACTGTTAGCGCCCTGCAGCACGCCCATAATTCCGGGGAATTTGCCTATCCCTGTAGGCCCCAAACAGAAATTACTGATGTCTGGGGACCTTCAATTTCATACCCAAGGAAGGTCTTGAATTTCAAAGGAAAATCAATCCAACGTGCAGTTGATCGGTTGAGATTGAGCAATCCTCCTATAGATGTGAAACGAACCAGTATTCCCCTTGAAATCCAGAAACTGCAGCCCAACTTGAAGATCTCTTTGCACAGTCCTAGAGTCCAGTCCACCATACCCCAGCCCATGATTATCCGCTCCAGGTTCTCTGGCAGCTTAAAGGGTGGAGACCAAGTGACCAGTTCAATTGAAAGGGCTGTGTGCAGTACGGGTCCCCTGACCAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931-'17-17,'17-13,19-17
Average complexity
C2
Mappability confidence:
90%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.600 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAGAGCTCCTACCAGGC
R:
TTGGGTGACTGGGCAGTTTTC
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains