HsaEX1014586 @ hg38
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr18:36602674-36612095:+
Coord C1 exon
chr18:36602674-36602768
Coord A exon
chr18:36608728-36608748
Coord C2 exon
chr18:36611952-36612095
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTTGTCTTTTCAAGAAT
3' ss Score
7.88
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGGTCAAACCTTGGTCAAATATCATGGAAATCCTGGAGGAAAAAGATGGAGTTGATACGGAGCTACTGGTTTATGCAATGACTTTGGTGAACAAG
Seq A exon
AATGTCAGATGGAATCATACA
Seq C2 exon
ACGTTATCAGGACTACCAGACCAAGACACCTTCTACGACGTCGTGGACTGCCTGGAGGAGCTGGGCATTGCTGCTGTGTCCCAGAGGCACTTGAACAAGAAAGGGACTGACCTGGACTTAGTGGAGCAACTCAACATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775-'47-37,'47-36,48-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000590592fB15748
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGCTACTGGTTTATGCA
R:
CAGCAATGCCCAGCTCCTC
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains