HsaEX1016316 @ hg38
Exon Skipping
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20887]
Coordinates
chr2:144235676-144332568:-
Coord C1 exon
chr2:144332439-144332568
Coord A exon
chr2:144328529-144328663
Coord C2 exon
chr2:144235676-144235737
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGGTTCTGATGTCAGTCC
3' ss Score
2.98
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AGGCGGCCGCGGGCCGGGAGGGGCGGCGGCATCCGCGGCGGCCGCGGGGGAGGGGCACGGCGTCAGCGCGTCGCCGGCTGGGCCGCGCCGGTGGCCAGGAGGGAGAGACAAGGAGGAGGAGGAGGAGGAG
Seq A exon
TCCTAGTCTGCCTGGCCTACTCACTGCCAGATCAGTTTCTTCTATTCAGACCGAAGATATTTTAAGACCTCTGTCACCTACAACGGGAAGGATCTGGAATTATTCTGGTGCCCTGAGCATCCATTGCTCACAAAG
Seq C2 exon
GTATCTCTGCATTAGCCAGATTGGACATATGTAAAGGGACATCAGTATATCTGGATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964_MULTIEX1-1/31=C1-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGGGAGAGACAAGGAG
R:
ACTGATGTCCCTTTACATATGTCCA
Band lengths:
82-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains