HsaEX1016543 @ hg38
Exon Skipping
Gene
ENSG00000270604 | HCG17
Description
HLA complex group 17 (non-protein coding) [Source:HGNC Symbol;Acc:HGNC:31339]
Coordinates
chr6:30234358-30254464:-
Coord C1 exon
chr6:30254347-30254464
Coord A exon
chr6:30242147-30242311
Coord C2 exon
chr6:30234358-30234450
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCCAAATCTCTTGCAAATAGGCC
3' ss Score
6.12
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATACATTTCATCAATGAAGCCTTCTGGACCTGGAGTTTCCTATATGAGAAGGATTTTGATTACACATTCAATTTCTACAATCAATATATGACTGGCCACATTTTCTATCTCTTCTCAG
Seq A exon
GCCACACCGTAGTCATAGAGCAAGAGGACTCAGATACAGTTTGGTTGGTCCTTTACCTTCAAAAGTTCAAGTGCTGGCTGCCGAGACTTCTCCAACTCAGTGATCAGGGTCCCAAGCTGGACCACCTCCTCAGAACCCTTGATGACACGGCTGTTCCTCCTTTTG
Seq C2 exon
AGACACTTACTGATGCAAAGGAGACTGAACAGTGAAGGATCTCACTCAGAATCCTGTCCACAATCTGTCCAGTTTACACCTTACCCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000270604_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTTCATCAATGAAGCCTTCTGG
R:
CTCTTTGGGGTAAGGTGTAAACTGG
Band lengths:
210-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains