HsaEX1016751 @ hg38
Exon Skipping
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]
Coordinates
chr7:81742253-81743471:-
Coord C1 exon
chr7:81743353-81743471
Coord A exon
chr7:81742909-81742949
Coord C2 exon
chr7:81742253-81742353
Length
41 bp
Sequences
Splice sites
3' ss Seq
TACCTACCTTTCCTCCCCAGAGA
3' ss Score
9.77
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATATCCCGACAAGGGCTTTGATGATAATTATTGCCGCAATCCCGATGGCCAGCCGAGGCCATGGTGCTATACTCTTGACCCTCACACCCGCTGGGAGTACTGTGCAATTAAAACATGCG
Seq A exon
AGACATAACATGGGCTCTCAACTGATGGTGAACTTCTTCTG
Seq C2 exon
CAGAATGATGGGGAAGTTCCTCTGAACAAACCTAACTGAATATTATCCACACTATGGTACTGCCGAGGTAAATCTCTCTCAATCTAGACCTGCTAATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-'15-21,'15-20,16-21
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=95.1)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000222390fB17032
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCCATGGTGCTATACTC
R:
ACCTCGGCAGTACCATAGTGT
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains