HsaEX1016852 @ hg38
Exon Skipping
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr6:142836935-142946193:-
Coord C1 exon
chr6:142945944-142946193
Coord A exon
chr6:142907011-142907058
Coord C2 exon
chr6:142836935-142837047
Length
48 bp
Sequences
Splice sites
3' ss Seq
AGGTCTTGCTTTGGTTACAGAGA
3' ss Score
4.97
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TGTCAGAAAAATAAATAAAGGCAAGAGGAGCCTGGGCTGGCGGTCGGGATCTTTTCCCTCCCTCCGCGCCCGCCCTCCCTCTGTCCTTAAGGAAATGCTACCAGACACCCCCCACCAGACACGCTCAGCCTTGGCGAGGAGCGGCCGCCGCGGCAGCGAGAACAAGGGCACCAGGGGGGTTTCCTCCCCCTCCTCCTCTCCCTCCTCCTCCCCGTCCTCCTTCTCCTCCTCCTCAGCGGTGACTTTCCAG
Seq A exon
AGATCTGGCCATTGGTGAACTCTCCTGTGGAACAGTCATTGTTTTATG
Seq C2 exon
GTGGAGCCTTTGAATTTTTTAAAAGACCATAGTAATCAGATCTACTTGAAAAATTAAGTGAATTGATTTGGTTGGAATGCTCTTTTACCGATGCTTTAACATACAGCCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818_MULTIEX2-2/11=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTCTCCTCCTCCTCAGC
R:
TGGCTGTATGTTAAAGCATCGGT
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains