HsaEX1017664 @ hg38
Exon Skipping
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3 [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr19:10663010-10666649:+
Coord C1 exon
chr19:10663010-10663110
Coord A exon
chr19:10663692-10663781
Coord C2 exon
chr19:10666492-10666649
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTATTTTTAGTAGAGA
3' ss Score
4.02
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAGTGAGGCAGTCGTTATAGCAAGGGCACACCCACGTTTCTCATTTTGAACAGTGAAGAAAGCAGATGGAAAGCCACATGTAGGGCATTTGCTGAAGACAG
Seq A exon
AGAGGGGTTTCAACGTGTTAGCCAGGATGCTATCGATCTCCTGACCTCATGATCCACCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAG
Seq C2 exon
CCAGTGGGACACCTCACAAGTCAGCTCCGATGTCCTCAGGACAAGACTGCTATAGTCACCAGTGCTTTGTTGCTTTCTGGCGCTCCGGTAGGATCCAGGCTCACTTGGTATATCCCCTGCTGCAGATTACGGTCCACTTCTCCCGGGAGCTGCTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351-'6-10,'6-9,7-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCGTTATAGCAAGGGCA
R:
GAGCGCCAGAAAGCAACAAAG
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains