HsaEX1017934 @ hg38
Exon Skipping
Gene
ENSG00000143319 | ISG20L2
Description
interferon stimulated exonuclease gene 20 like 2 [Source:HGNC Symbol;Acc:HGNC:25745]
Coordinates
chr1:156724148-156725442:-
Coord C1 exon
chr1:156725342-156725442
Coord A exon
chr1:156724463-156724627
Coord C2 exon
chr1:156724148-156724348
Length
165 bp
Sequences
Splice sites
3' ss Seq
CAAACATGAGTGTCATTTAGGAC
3' ss Score
0.76
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTCGGTTGTCCTCATTGGTAGCATGTCCTCCTACTTCAAGAGCCTGAAATGGCTAGGTGTGGTGACATGTGTCTGTAATCCCAGCTACTCAGGAGTTTGAG
Seq A exon
GACTGAAGGCAAATTAATGTCATGGGGTGGAGATCAATAAGAAGGTAAGGAGCCACTGGCAGTATGAGTCCAAACAGGGTATACCATGGAAATCACCTGTGGAAGAGGAAGGTGGATTCCAGAAGAAAGAAAACTTGTGGGAGTGAGCATTTCAAGGATGGAGAG
Seq C2 exon
ATCTTGAAGATACTCACAGGGAAGATAGTGGTGGGGCATGCCATCCACAACGACTTCAAAGCCCTTCAGTACTTTCACCCCAAGTCCCTCACCCGTGACACCTCCCATATCCCCCCCCTCAACCGGAAGGCTGACTGCCCGGAGAATGCCACCATGTCTCTGAAGCATCTCACCAAGAAGCTGCTAAACCGGGATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143319-'9-7,'9-6,10-7
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.149
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
ENST00000368219fB17735
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAGGTGTGGTGACATGTG
R:
CCGGTTTAGCAGCTTCTTGGT
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains