HsaEX1018359 @ hg38
Exon Skipping
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel subfamily H member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:162455989-162504657:-
Coord C1 exon
chr2:162504443-162504657
Coord A exon
chr2:162502163-162502294
Coord C2 exon
chr2:162455989-162456089
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCATTATCTCTGCAGGAT
3' ss Score
10.79
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GGCCTTTTAATCATATCAAGTCAAGCCTCCTGGGATCCACATCAGATTCAAACCTCAACAAATACAGCACCATTAACAAGATTCCACAGCTCACTCTGAATTTTTCAGAGGTCAAAACTGAGAAAAAGAATTCATCACCTCCTTCTTCAGATAAAACCATTATTGCACCCAAGGTTAAAGATCGAACACACAATGTGACTGAGAAAGTGACCCAG
Seq A exon
GATCTCTTTATCCCTACATCACGAGGGCCTTAGTAGAACACCTGGCAGAATGGAGTTCATCAAATGTTTGCTGAATAAATGAGTGCATAAATGGATGGAAGAGTTAGCCAAGGGAAGGGATAAGAATTCCAG
Seq C2 exon
GGAAATTTATAGCACTAATTGCCCACATCAGAAAGCTGGGAAGATCTCAAATCAACACCCTAACATCACAATTAAAAGAACTAGAGAAGCAAGAGCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-'14-20,'14-19,15-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000332142fB17983
Main Skipping Isoform:
ENST00000332142fB17984
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTCAAGCCTCCTGGGAT
R:
TTCCCAGCTTTCTGATGTGGG
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains