HsaEX1018374 @ hg38
Exon Skipping
Gene
ENSG00000157542 | KCNJ6
Description
potassium voltage-gated channel subfamily J member 6 [Source:HGNC Symbol;Acc:HGNC:6267]
Coordinates
chr21:37848666-37913814:-
Coord C1 exon
chr21:37913229-37913814
Coord A exon
chr21:37910501-37910615
Coord C2 exon
chr21:37848666-37848997
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATCACCGGTCTTATTCCCAGTCA
3' ss Score
6.17
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
CTCCTACCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCACACCACAACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCATGACGTTGTGATCCGCCTGCCTCAGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCGTATCCGGCCCAGCCAAATTCTTTCTAAGGGTCCTAGGACTGAAGAGGGTGGAGATATAGTTTCCTCTCGGTCTAGAACTGGAAGGAATCAAAACAACACTGGTGAGCTTCCGAAAAGGAGAGAGAGTTTGTTAGCAAGATGAGAGCCAGTGATCACATCTTCAAGCCTGCGTGTGAGCAAGGTGGCTACATTTCCTAGGTTGCAGTCGTAGGAAACCGAGAGGAGTCACTTCTCTTAATACAAACAAGGAAGAAACTGCAGGAGGGGAGGATTTATTACCATTCAAGTTCCATTTCAACATTCATACAGGGAAAACAG
Seq A exon
TCACAGAGATGTGGTTTCCGACATGAAATCCTTACAAAAGGAACCAGAAAGTGCATCTGTGGCTAAAAAGATCCATGTCCTTGCCAACAACTGTTCTGTGGGACTAAATCTGAAG
Seq C2 exon
GAGCTCTAGGAAAGGAGAAATGAGTCACTCACCAATATTCCAAGAAACCAACTCCCCTGGGGAAATTCGTGAAACATTGTCTGGATATTGACGCTGAAAGTCAAGAGCTTGTCCCACAGTATTTCAAGCCAGGGAGGACACACACACAGCTGGGTTTGGAGAAACTCTGGCAGCCATGTGGTCCAACTGTTTTCTTACTCTTATCTCTGCTACCCATCACTCTTAGAAGGTCACGTGCTCAACATGCTTTCAAGAAAGTACCCAGAGCAATGCTCCAAATACTCTCCTGCCATCTACGAACTCACGCTGAAGCCCAAAGGAATTGAGGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157542-'1-2,'1-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAGGAGGGGAGGATTT
R:
AACAGTTGGACCACATGGCTG
Band lengths:
256-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains