HsaEX1018470 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128888863-128890513:-
Coord C1 exon
chr7:128890343-128890513
Coord A exon
chr7:128889513-128889516
Coord C2 exon
chr7:128888863-128889039
Length
4 bp
Sequences
Splice sites
3' ss Seq
CACCCTTCTTTTTTAAAAAGGGA
3' ss Score
7.12
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCTGCCTGTACCAGGGGAAGGAGTTTGCCAGCGGGGAGCGCTTCCCATCGCCCACTGCTGCCTGCCACCTCTGCCTTTGCTGGGAGGGCAGCGTGAGCTGCGAGCCCAAGGCATGTGCCCCTGCACTGTGCCCCTTCCCTGCCAGGGGCGACTGCTGCCCTGACTGTGATG
Seq A exon
GGAG
Seq C2 exon
GCTGTGAGTACCTGGGGGAGTCCTACCTGAGTAACCAGGAGTTCCCAGACCCCCGAGAACCCTGCAACCTGTGTACCTGTCTTGGAGGCTTCGTGACCTGCGGCCGCCGGCCCTGTGAGCCTCCGGGCTGCAGCCACCCACTCATCCCCTCTGGGCACTGCTGCCCGACCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=94.8)
A:
NO
C2:
PF0009313=VWC=WD(100=95.0)
Main Inclusion Isoform:
ENST00000610776fB18050
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCCCTGACTGTGATG
R:
GACAGGTACACAGGTTGCAGG
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains