HsaEX1018475 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128902777-128903820:-
Coord C1 exon
chr7:128903727-128903820
Coord A exon
chr7:128903164-128903383
Coord C2 exon
chr7:128902777-128902859
Length
220 bp
Sequences
Splice sites
3' ss Seq
AATGCAAAATCTTGTAACAGCCA
3' ss Score
2.95
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGGAGCCGAGTTCGCTGCATGGCCCTGAAGTGCCCGCCTAGCCCCTGCCCAGAGCCAGTGCTGAGGCCTGGGCACTGCTGCCCAACCTGCCAAG
Seq A exon
CCAAGGGCAGGAATAGAAGCAGGCACCAGCTAGTGTGCGAATTCAGAGGAAGGAGACCGAATCCAGCCTGGGCACAGGAGGGAAAGCGTCCTGGAGGCAGCTGGTCCCCAGGTGGCCCTTAAGGATAAAGAAAAGTTAGCTTGGTGAAGGGCTGAGGAAGGCAGTGAGCCTTCTAGGAAGAGGGGAGAAATCAAGCACAGGCGTGGCCCTGACACGGAGG
Seq C2 exon
GCTGCACAGAAGGTGGCTCTCACTGGGAACATGGCCAAGAGTGGACAACACCTGGGGACCCCTGCCGAATCTGCCGGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.425 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
NO
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Inclusion Isoform:
ENST00000610776fB18052
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGAGTTCGCTGCATG
R:
CAGGCACCGGCAGATTCG
Band lengths:
175-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains