HsaEX1018523 @ hg38
Exon Skipping
Gene
ENSG00000173120 | KDM2A
Description
lysine demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr11:67121234-67180217:+
Coord C1 exon
chr11:67121234-67121358
Coord A exon
chr11:67143204-67143371
Coord C2 exon
chr11:67180079-67180217
Length
168 bp
Sequences
Splice sites
3' ss Seq
GCTAATTTTTGTATTTTTAGTAG
3' ss Score
3.6
5' ss Seq
TCGGTATGA
5' ss Score
7.72
Exon sequences
Seq C1 exon
TGTTGCAATCTGGTTCCTAAGGAGGAAGAGGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTTCAACAGAAGAGTGAGAGATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTG
Seq A exon
TAGAGACGGGGTTGGCTGGTCTTGAACTCGTGACCTCAGGTGATCCTCCCGCCTCCGCCTCCCAAGGTGTTGGGATTACAGCCGTGAGCCACTGCATCTGGCCTGTCTGTTCATTTCATAAACATCTGAGAGGGTCTTTGCTACAGGACTTCAGGAGCACTAGCATCG
Seq C2 exon
CGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173120_MULTIEX3-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=NA C2=0.210
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGAGGAAGAGGAAGGCAGC
R:
CCTTCCATAAAAGTAACAAAATTGGC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains