HsaEX1018524 @ hg38
Exon Skipping
Gene
ENSG00000089094 | KDM2B
Description
lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr12:121516347-121521100:-
Coord C1 exon
chr12:121520985-121521100
Coord A exon
chr12:121517000-121517031
Coord C2 exon
chr12:121516347-121516863
Length
32 bp
Sequences
Splice sites
3' ss Seq
TATCTTTCCCCCCCTCCCAGTGG
3' ss Score
9.21
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTGGATCCATGCCGTCTACACCCCTGTAGACTCTTTGGTGTTCGGCGGAAACATCCTGCACAGCTTTAACGTGCCCATGCAGCTGCGGATCTACGAGATCGAGGACAGGACGCGG
Seq A exon
TGGCTCTAGTGAAAGCAGCCTTCCCAGAAAAG
Seq C2 exon
GAGAAAAACAAATTGTAGGACACTTCCACCCACTCTCACATTTTGACTTTTTCAAGTCCTTGAGACCTGGGAGTTCTAGATACACTCGAGAAACCTTTTGTTGTCATCTCCTGAGGTCACTCAGCTTGAAGATGACTTGGACCTCCGAGGAAGGGCTGAGGCCAGGTGCCGCTGAGTGGGCCCTGAGGTCCTCTGGTAGACGGATGACCTGCAGGCTGGGAGCATTGCATGCCTTGTGACTGCCTTGCCTTTTGTTTTGGACTGACGTTGGTTAACTCAATTTGGTGAGGCTCCGAGTCTGTCAACAAATAATGTTGAGCAACCGTATGTTTAATGTCCCCAGGCATGTGGCTGAAACCTTTTGAAGGCGAAGGGTGGAAGGCGACAACCTGTTTGTAAGTCAATTCTTTGCAAATTTTTGTTTCCCGCAGTCCTCTCTTGGAAAAAAAAATAAATAAATAAATAAAAATTTGAATTCCTTCATCAGCATTTGTTTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089094-'33-29,'33-28,34-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=PD(11.4=59.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000543852fB18082
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGTGTTCGGCGGAAACAT
R:
TGTGAGAGTGGGTGGAAGTGT
Band lengths:
122-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains