HsaEX1018607 @ hg38
Exon Skipping
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:6824185-6842204:+
Coord C1 exon
chr4:6824185-6824684
Coord A exon
chr4:6830819-6830951
Coord C2 exon
chr4:6842067-6842204
Length
133 bp
Sequences
Splice sites
3' ss Seq
CAGGCTTCTCATCCTAATAGGTC
3' ss Score
8.11
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTTCTGCCGGAGACTTCCATTTGGCCTCAATGTGAAATTAAAGTAGAAAATCACATCTACATGCATGTTGCTATCAGGATGTTGATTCATTAGTCATGCCTGAAGAGGGAAAGTCTGTTTTAGGTGGCTGACTACCAGCAAAAATAAATGCTTATCCTACATGTCAAGCATCTCTACTTTTTACTGGAGTGAAAATCCCCTCCAGATACCAACAGAATATCAACTGCAGAAAATGCTTCACATTTTAAGGATGTCGGCAACCTAAATTCATGTACCCTATCTGTACAGTTGTTGTGGATGGTTTGCCATCTGAAAGCTCCTCAAGTTCTTATCCAGGCCCTGTGTCTGTTTCTGAAATGTCTCTGCTTCATGCTTTGGGTCCAGTGCAGACCTGGCTGGGACAAGAGCTCGAGAAATGTGGCATTGATGCCATGATTTACACTCGGTATGTCCTCAGTCTTCTGCTGCATGACAGCTATGACTACGACCTGCAGGAACAG
Seq A exon
GTCATCTTTGCTATGGAACTGTTCCTGACCTGATCACTGCAGTGACAAGACTTGGGTGGCTAGGGTACAAGCACCTGGAACCACAAGGACTAAGAATTGGAGAGGATGATTCTCCAAGGGAAATATGGAATGA
Seq C2 exon
GAGAATGACATCTTCCTGGGCTGGGAAAAAGGAGCTTATAAGAAATGGGGAAAGAGTAAGAAAAAATGTTCAGATCTAACTCTAGAAGAAATGAAAAAACAGGCTGCTGTCCAGTGTCTTCGATCTGCTTCTGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871_MULTIEX2-2/11=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PU(4.2=70.1),PF144001=Transglut_i_TM=PU(13.0=15.6)
A:
PF153761=DUF4603=PD(12.5=72.7)
C2:
PF153761=DUF4603=FE(3.7=100),PF144001=Transglut_i_TM=PU(54.1=87.0)
Main Inclusion Isoform:
ENST00000307659fB18146
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCATGCTTTGGGTCCAG
R:
GAAGACACTGGACAGCAGCC
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains