HsaEX1019085 @ hg38
Exon Skipping
Gene
ENSG00000134539 | KLRD1
Description
killer cell lectin like receptor D1 [Source:HGNC Symbol;Acc:HGNC:6378]
Coordinates
chr12:10314673-10329600:+
Coord C1 exon
chr12:10314673-10314773
Coord A exon
chr12:10315313-10315473
Coord C2 exon
chr12:10319561-10329600
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATTTTTAATTTTTTGTCAAGACA
3' ss Score
1.79
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATTTCCATCATTTGAAACTTTTAATACAAAGAACTGCATAGCGTATAATCCAAATGGAAATGCTTTAGATGAATCCTGTGAAGATAAAAATCGTTATATCT
Seq A exon
ACAAGGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGGGATTCTCCCACCTTGGATTCCCAAAGTGCTGGGATTATAGGTGTGAACCACCATCCCTGGCCCTCTTCACATTCTTGTATGAAGATTGATTTGGGAAAAATGCATTTCAG
Seq C2 exon
ATTACTTGATCTGGGGAAAACCAGTTATAATGTCATGAGCAGCCCTGTTGAAAGGACCATGCGGCAAGGAACTGAAGACTCTTACACACAGCCAGCAAGGAACTGAAGTCTATTTCCAATAGCCATGCTATGAGCCTTCTTTGCTTGTATAGGCTCCAGTCTTAGTCAAGCCTTCAGATGATTACAGCCCCCAGCCAACACCTTGACGGCAACCTCATGAGAGACCCTGAGCTAGGTCCATCGTGCTATGCTGTTCGAGGATTCCTCACTCTCAGAAGCTGTGTGAAATAGTAAAGTGTTTATTCTTTTTTTTTTTTTTTTTTTTGACAGAGTCTCACTCTGTCACCTGGGCTGGAGTGCAGTGGGGCCATGTCGGCTCACTGCAACTTCTGCCTCCTGGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGATTACAGGTGTGCACCACCACTCCTGGCTAATTTTTTTGTATTTTTAGTACAGACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134539_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(36.4=87.8)
A:
NO
C2:
PF0005916=Lectin_C=PD(36.4=87.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGCATAGCGTATAATCCA
R:
GGCTTGACTAAGACTGGAGCC
Band lengths:
244-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains